track gene_phase type bigBed 9 itemRgb on shortLabel Gene phase longLabel Gene phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/gene_phase_amp.bb visibility pack priority 0 track gene_kalman_smoothing_phase_forward type bigBed 9 itemRgb on shortLabel Gene kalman smoothing phase forward longLabel Gene phase by kalman filter forward strand mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/gene_kalman_phase_R2_forward_1000bp.bb visibility dense priority 1 track gene_kalman_smoothing_phase_reverse type bigBed 9 itemRgb on shortLabel Gene kalman smoothing phase reverse longLabel Gene phase by kalman filter reverse strand mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/gene_kalman_phase_R2_reverse_1000bp.bb visibility dense priority 2 track bin_phase_100_forward type bigBed 9 itemRgb on shortLabel Bin phase forward 100bp longLabel forward bin 100bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_forward_100bp.bb visibility hide priority 3 track bin_phase_100_reverse type bigBed 9 itemRgb on shortLabel Bin phase reverse 100bp longLabel reverse bin 100bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_reverse_100bp.bb visibility hide priority 4 track bin_phase_1000_forward type bigBed 9 itemRgb on shortLabel Bin phase forward 1000bp longLabel forward bin 1000bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_forward_1000bp.bb visibility dense priority 5 track bin_phase_1000_reverse type bigBed 9 itemRgb on shortLabel Bin phase reverse 1000bp longLabel reverse bin 1000bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_reverse_1000bp.bb visibility dense priority 6 track bin_phase_10000_forward type bigBed 9 itemRgb on shortLabel Bin phase forward 10000bp longLabel forward bin 10000bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_forward_10000bp.bb visibility hide priority 7 track bin_phase_10000_reverse type bigBed 9 itemRgb on shortLabel Bin phase reverse 10000bp longLabel reverse bin 10000bp phase and amplitude mapped in RGB space (red: 0h, yellow: 6h, green: 12h, blue: 18h) bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bb/bin_phase_amp_reverse_10000bp.bb visibility hide priority 8 track TAD type bigBed 3 shortLabel TADs longLabel TADs bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_tad/TADMap_scaffold_mm39.bb visibility squish priority 9 track PROseq_forward_1bp compositeTrack on subGroup1 t Time CT00=00 CT04=04 CT08=08 CT12=12 CT16=16 CT20=20 CT28=28 CT24=24 CT32=32 CT36=36 CT40=40 CT44=44 dimensions dimX=t sortOrder t=+ shortLabel PROseq forward 1bp longLabel PRO-seq data composite track forward 1bp (sum normed count per bin + 1, 1bp: norm count) type bigWig visibility hide maxHeightPixels 100:30:8 autoScale group descriptionUrl PROseq.html priority 10 track CT00_forward_1 parent PROseq_forward_1bp on subGroups t=CT00 shortLabel CT00 longLabel bigDataUrl http://upnaesrv1.epfl.ch/PROseq_phase/tracks_bw_unbinned/CT00/NormCoverage_3p_forward.bw type bigWig color 0,0,255 negateValues off minLimit 0 descriptionUrl mm39/CT00_forward.html track CT04_forward_1 parent PROseq_forward_1bp on subGroups t=CT04 shortLabel CT04 longLabel bigDataUrl 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