#3T3 track Histones-3T3 container multiWig shortLabel Histone 3T3 longLabel Histone ChIP 3T3L1 (Mikkelsen) type bigWig visibility full maxHeightPixels 70:70:32 configurable on autoScale on aggregate transparentOverlay showSubtrackColorOnUi on priority 1.0 track H3K4me3-Mksen parent Histones-3T3 shortLabel H3K4me3 (3T3L1) longLabel H3K4me3 ChIP Mikkelsen (3T3L1) type bigWig bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K4me3.density.bw autoScale on color 102,204,153 track H3K4me1-Mksen parent Histones-3T3 shortLabel H3K4me1 (3T3L1) longLabel H3K4me1 ChIP Mikkelsen (3T3L1) type bigWig bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K4me1.density.bw color 217,217,140 autoScale on track H3K27ac-Mksen parent Histones-3T3 shortLabel H3K27ac (3T3L1) longLabel H3K27ac ChIP Mikkelsen (3T3L1) type bigWig bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K27ac.density.bw color 210,121,121 autoScale on track Pol2-3T3 container multiWig shortLabel Pol2 NIH3T3 longLabel Pol2 ChIP NIH3T3 (Julia) type bigWig visibility full maxHeightPixels 70:70:32 configurable on autoScale off aggregate transparentOverlay showSubtrackColorOnUi on priority 2.0 track Pol2-12h parent Pol2-3T3 shortLabel Pol2 12h longLabel Pol2 ChIP 12h type bigWig bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/yVBH6bAxoHaTE0aBQG1R autoScale off viewLimits 0:20 color 255,240,200 track Pol2-20h parent Pol2-3T3 shortLabel Pol2 20h longLabel Pol2 ChIP 20h type bigWig bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/iDm4kgjozZOvO2bvOyNT autoScale off viewLimits 0:20 color 255,110,70 track BMAL1-3T3 container multiWig type bigWig shortLabel BMAL1 NIH3T3 longLabel BMAL1 ChIP NIH3T3 (Julia) configurable on visibility full viewLimits 0:70 autoScale off maxHeightPixels 70:70:32 aggregate transparentOverlay showSubtrackColorOnUi on priority 3.0 track BMAL1-12h parent BMAL1-3T3 bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/oy3bKIF2vk5LTu1egtFr type bigWig shortLabel BMAL1 12h longLabel BMAL1 12h (low) CHIP viewLimits 0:70 autoScale off color 0,180,255 track BMAL1-20h parent BMAL1-3T3 bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/A0huobrSmGkxAFP2ns98 type bigWig shortLabel BMAL1 20h longLabel BMAL1 20h (high) CHIP viewLimits 0:70 autoScale off color 0,120,200 track Input-3T3 type bigWig bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/MEqJHNYNcSwi4SGK1Ugu shortLabel INPUT 3T3 longLabel INPUT ChIP 3T3 configurable on visibility full viewLimits 0:35 autoScale off maxHeightPixels 70:70:32 color 0,0,0 priority 4.0 #Liver track Pol2 container multiWig shortLabel Pol2 Liver longLabel Pol2 ChIP Liver (CycliX) type bigWig visibility full maxHeightPixels 70:70:32 configurable on autoScale off aggregate transparentOverlay showSubtrackColorOnUi on priority 2.1 track Pol2fwd parent Pol2 shortLabel Pol2 ZT06 fwd longLabel Pol2 ChIP Liver ZT06 (CycliX) fwd type bigWig bigDataUrl http://svitsrv25.epfl.ch/BED/Cyclix/PolII_ZT06_fwd.bw autoScale off viewLimits 0:20 color 255,120,80 track Pol2rev parent Pol2 shortLabel Pol2 ZT06 rev longLabel Pol2 ChIP Liver ZT06 (CycliX) rev type bigWig bigDataUrl http://svitsrv25.epfl.ch/BED/Cyclix/PolII_ZT06_fwd.bw autoScale off viewLimits 0:20 color 255,120,80 track Histones container multiWig shortLabel Histone Liver longLabel Histone ChIP Liver (CycliX) type bigWig visibility full maxHeightPixels 70:70:32 configurable on autoScale on aggregate transparentOverlay showSubtrackColorOnUi on priority 1.1 track H3K4me3fwd parent Histones shortLabel H3K4me3 ZT06 fwd longLabel H3K4me3 ChIP Liver ZT06 (CycliX) fwd type bigWig bigDataUrl http://svitsrv25.epfl.ch/BED/Cyclix/H3K4_ZT06_fwd.bw autoScale on color 102,204,153 track H3K4me3rev parent Histones shortLabel H3K4me3 ZT06 rev longLabel H3K4me3 ChIP Liver ZT06 (CycliX) rev type bigWig bigDataUrl http://svitsrv25.epfl.ch/BED/Cyclix/H3K4_ZT06_rev.bw autoScale on color 102,204,153 track H3K4me1 parent Histones shortLabel H3K4me1 longLabel H3K4me1 Liver ChIP (Jaenisch) type bigWig bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/FxLiLGVZ7oPqVufen5qb color 217,217,140 autoScale on track H3K27ac parent Histones shortLabel H3K27ac longLabel H3K27ac Liver ChIP (Jaenisch) type bigWig bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/d7tSK4CZMHh1sn5pzlVC color 210,121,121 autoScale on track CLOCK-BMAL1 container multiWig type bigWig shortLabel CLOCK-BMAL1 Liver longLabel CLOCK-BMAL1 Liver ChIP (Rey, 2011) configurable on visibility full viewLimits 0:35 autoScale off maxHeightPixels 70:70:32 aggregate transparentOverlay showSubtrackColorOnUi on priority 3.1 track BMAL1 parent CLOCK-BMAL1 bigDataUrl http://svitsrv25.epfl.ch/BED/Naef/ZT06_normalized_merged75.bw type bigWig shortLabel BMAL1 ZT06 longLabel BMAL1 Liver ZT06 CHIP (Rey, 2011) viewLimits 0:35 autoScale off color 0,120,200 track CLOCK parent CLOCK-BMAL1 bigDataUrl http://svitsrv25.epfl.ch/BED/Naef/CLOCK_m1_all_fullgen_uniq_merged65.bw type bigWig shortLabel CLOCK longLabel CLOCK ChIP (Naeflab) color 255,0,120 autoScale on track DNAseI priority 3.2 container multiWig type bigWig shortLabel DNAseI Liver longLabel DNAseI Liver ZT06-ZT18 merged (Schibler-CycliX) configurable on visibility full viewLimits 0:15 autoScale off maxHeightPixels 70:70:32 aggregate transparentOverlay showSubtrackColorOnUi on bigDataUrl http://htsstation.vital-it.ch/lims/mapseq/mapseq_minilims.files/ocRwz9z0EAE6xqJQtBeS track Peaks compositeTrack on type bigBed shortLabel Peaks longLabel Peak regions configurable on visibility pack showSubtrackColorOnUi on priority 4.1 track BMAL1peaks parent Peaks type bigBed 4 shortLabel BMAL1 Peaks longLabel BMAL1 Peaks (Rey, 2011) bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/BMAL1_sites.bb color 0,80,160 track CLOCKpeaks parent Peaks type bigBed 4 shortLabel CLOCK Peaks longLabel CLOCK Peaks (Rey, 2011) bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/CLOCK_sites.bb color 255,0,120 track Motifs compositeTrack on type bigBed shortLabel Motifs longLabel Motifs from weight matrices configurable on visibility pack showSubtrackColorOnUi on priority 5.1 track E1 parent Motifs type bigBed 6 shortLabel E1 scores bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/E1.bb useScore 1 color 200,200,200 track E1-E2 parent Motifs type bigBed 6 shortLabel E1-E2 scores bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/E1-E2.bb useScore 1 color 128,128,128 track F1-F2 type bigBed 6 shortLabel F1-F2 scores longLabel F1-F2 scores visibility hide configurable on bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/F1-F2.bb scoreFilterByRange on useScore 1 priority 6.1 track CAGE type bigBed 6 shortLabel F4 CAGE longLabel Fantom4 CAGE visibility squish configurable on bigDataUrl http://upnaemac2.epfl.ch/~naef/BED/F4_cluster_coordinates.bb priority 7.1